All Questions
Tagged with bert-language-model named-entity-recognition
75
questions
4
votes
1
answer
3k
views
Tensorflow BERT for token-classification - exclude pad-tokens from accuracy while training and testing
I'm doing token-based classification using the pre-trained BERT-model for tensorflow to automatically label cause and effects in sentences.
To access BERT, I'm using the TFBertForTokenClassification-...
- 63
4
votes
0
answers
199
views
How to create iob tags for a sentence?
I have a dataset for NER in which I have to do POS tagging and IOB tagging, but I don't understand the concept or method of how iob tags are created. Even CoNLL is pretagged.
3
votes
2
answers
2k
views
Company name extraction with bert-base-ner: easy way to know which words relate to which?
Hi I'm trying to extract the full company name from a string description about the company with bert-base-ner. I am also open to trying other methods but I couldn't really find one. The issue is that ...
- 41
3
votes
2
answers
2k
views
AttributeError: 'TokenClassifierOutput' object has no attribute 'detach'
Could you please assist me in solving the following error: 'TokenClassifierOutput' object has no attribute 'detach' The error persists even when modifying the code like output = model(input_ids, ...
3
votes
0
answers
233
views
Name of training and test data files in NLP (BioBERT GitHub repo)
I'm reading the README.md file of the BioBERT GitHub repo:
Let $NER_DIR indicate a folder for a single NER dataset which contains train_dev.tsv, train.tsv, devel.tsv and test.tsv. Also, set $...
- 395
3
votes
1
answer
902
views
CUDA Runtime Error: Which Cuda version is compatible to run NER task using BERT-NER
I have setup all the requirement packages installed on my VM and i found no nvidia GPU driver installed, In the requirements doesn't have nvidia GPU driver installation instructions, I want to know ...
- 929
3
votes
0
answers
906
views
Load bert model in java
I have bert model for named entity recognition.(config.json, model.bin, vocab.txt).
I can load model and get named entities from text with model in python
input_text = "I live in London"
model_dir = "...
- 175
2
votes
4
answers
5k
views
Could not find function 'spacy-transformers.TransformerModel.v3' in function registry 'architectures'
I was trying to create a custom NER model. I used spacy library to create the model. And this line of code is to create the config file from the base.config file.
My code is :
!python -m spacy ...
- 41
2
votes
2
answers
4k
views
How to load BertforSequenceClassification models weights into BertforTokenClassification model?
Initially, I have a fine-tuned BERT base cased model using a text classification dataset and I have used BertforSequenceClassification class for this.
from transformers import ...
- 971
2
votes
1
answer
3k
views
How do I use my trained BERT NER (named entity recognition) model to predict a new example?
I trained my own BERT NER following this Medium post: https://medium.com/@yingbiao/ner-with-bert-in-action-936ff275bc73
I saved my model to the disc and successfully loaded it.
model = ...
- 21
2
votes
2
answers
3k
views
Getting the input text from transformers pipeline
I am following the tutorial on https://huggingface.co/docs/transformers/pipeline_tutorial to use transformers pipeline for inference. For example, the following code snippet works for getting the NER ...
- 935
2
votes
1
answer
2k
views
Cannot add CRF layer on top of BERT in keras for NER
I am facing an unknown issue while training my BERT-CRF model for NER. I am using keras.contrib for the CRF model.
Here are the imported libraries.
!pip install transformers
!pip install git+https://...
- 302
2
votes
1
answer
979
views
How to mask [PAD] and [SEP] tokens to prevent their prediction and loss calculation for NER task on BERT models?
I am trying to fine-tune BERT model for NER tagging task using tensorflow official nlp toolkit. I found there's already a bert token classifier class which i wanted to use. Looking at the code inside, ...
- 665
2
votes
0
answers
1k
views
huggingface pipeline: bert NER task throws RuntimeError: The size of tensor a (921) must match the size of tensor b (512) at non-singleton dimension 1
I try to set up a german ner, pretrained with bert via the huggingface pipeline. For some texts the following code throws an error "RuntimeError: The size of tensor a (921) must match the size of ...
2
votes
0
answers
101
views
How to classify same entity based on the context of sentence?
I am working on a conversational AI that used to understand customer requests and make necessary responses. I have used BERT to train my dataset for NLU tasks intent classification and entity ...
- 21
2
votes
2
answers
2k
views
Python RuntimeError: input sequence
I try to run NER in Indonesian Language
I've read some resources, they said that the BERT model has positional embeddings only for first 512 subtokens. So, the model can't work with longer sequences. ...
- 135
2
votes
0
answers
337
views
BERT weight calculation
I am trying to understand the BERT weight calculation. Please suggest me some article which can help me to understand the internal workings of BERT. I have read articles from Medium.
https://...
1
vote
1
answer
423
views
How to create a training pipeline for huggingface bert base uncased clinical NER
Current BERT base uncased clinical NER predict clinical entities( Problem, Test, Treatment)
I want to train on different clinical dataset to get entity like ( Disease, Medicine, Problem)
How to ...
- 11
1
vote
1
answer
610
views
Classification report in NER models ? seqeval vs sickit learn
I'm building a NER model to identify some medical entities. In order to evaluate my model, I used the classification report from seqeval and compared it to sklearn's classification report.
as for ...
- 23
1
vote
1
answer
330
views
Bert NER model start and end position None after fine-tuning
I have fine-tuned a BERT NER model to my dataset. The base model that I am fine-tuning is “dslim/bert-base-NER”. I have been successfully able to train the model using the following script as refrence:...
- 77
1
vote
1
answer
525
views
How to add simple custom pytorch-crf layer on top of TokenClassification model using pytorch and Trainer
I followed this link, but its implemented in Keras.
Cannot add CRF layer on top of BERT in keras for NER
Model description
Is it possible to add simple custom pytorch-crf layer on top of ...
- 1,455
1
vote
1
answer
535
views
NER Classification Deberta Tokenizer error : You need to instantiate DebertaTokenizerFast
I'm trying to perform a NER Classification task using Deberta, but I'm stacked with a Tokenizer error. This is my code (my input sentence must be splitted word by word by ",:):
from transformers ...
- 380
1
vote
1
answer
1k
views
Using Pretrained BERT model to add additional words that are not recognized by the model
I want some help regarding adding additional words in the existing BERT model. I have two quires kindly guide me:
I am working on NER task for a domain:
There are few words (not sure the exact numbers)...
- 306
1
vote
1
answer
2k
views
Are special tokens [CLS] [SEP] absolutely necessary while fine tuning BERT?
I am following the tutorial https://www.depends-on-the-definition.com/named-entity-recognition-with-bert/ to do Named Entity Recognition with BERT.
While fine-tuning, before feeding the tokens to the ...
- 13
1
vote
1
answer
704
views
Using BERT for extracting Product Features
How can I use BERT to extract product features from text?
For example, how to extract the ids from the next emails - WSK30015675, KTXFFC156, 4569TT11DRE
Hello John, Please order 15 dresses ID ...
- 857
1
vote
0
answers
17
views
Issue with 'ValueError' when computing metrics in NER using transformers library (Tuple is empty)
Description:
I am encountering issues while trying to compute metrics for Named Entity Recognition (NER) using the Hugging Face transformers library. The specific errors are 'ValueError' and I've been ...
1
vote
1
answer
94
views
my IndoBERT model got ValueError: The model did not return a loss from the inputs , only the following keys: last_hidden_state
I was trying to fine-tuned my IndoBERT model with my dataset. It was worked when i was using BERT base-uncased. But when I was gonna do it with IndoBERT, it returned
-----------------------------------...
1
vote
0
answers
75
views
Cannot reduce overfitting on BERT+BiGRU+Softmax network for named entity recognition
I am currently attempting to build a named entity recognition system for the Moroccan Dialect using BERT+ BiGRU+Softmax architecture. I am encountering overfitting (F1 score on validation set around ...
- 11
1
vote
1
answer
515
views
mask entities with Spacy NER?
I am working on some topic modeling and my data is heavy on locations. I want to mask them so the model doesn't see them as unique words.
I can find them with Spacy using NER, and this is how I'm ...
- 447
1
vote
1
answer
362
views
PyTorch, Bert model: optimizer zero_grad() error
I am relatively new to Python, and I am following a tutorial(https://towardsdatascience.com/named-entity-recognition-with-bert-in-pytorch-a454405e0b6a) regarding bert training for a task that I need.
...
- 145
1
vote
1
answer
152
views
Bert Tokenizer punctuation for named entity recognition task
I'm working on a named entity recognition task, where I need to identify person names, books etc.
I am using Huggingface Transformer package and BERT with PyTorch. Generally it works very good, ...
- 53
1
vote
1
answer
483
views
Pytorch based Bert NER for transfer learning/retraining
I trained an Bert-based NER model using Pytorch framework by referring the below article.
https://www.depends-on-the-definition.com/named-entity-recognition-with-bert/.
After training the model using ...
- 23
1
vote
1
answer
198
views
How to build 'ner_ontonotes_bert_mult' model from scratch
How can I custom train the model "ner_ontonotes_bert_mult". I want to train the model with my own dataset which have some different tags. How to train the model and use it?
When I am ...
- 21
1
vote
0
answers
288
views
How to extract noun phrases from a sentence using pre-trained BERT?
I want to extract noun phrases from sentence using BERT. There are some available libraries like TextBlob that allows us to extract noun phrases like this:
from textblob import TextBlob
line = "...
- 331
1
vote
0
answers
2k
views
size mismatch for classifier.weight: copying a param with shape torch.Size([9, 768]) from checkpoint. Current model is torch.Size([2, 768])
tokenizer = AutoTokenizer.from_pretrained("dslim/bert-base-NER")
model = AutoModelForTokenClassification.from_pretrained("dslim/bert-base-NER")
RuntimeError ...
- 11
1
vote
1
answer
938
views
BERT NER: can't convert CUDA tensor to numpy. Use Tensor.cpu() to copy the tensor to host memory first
I want to train my BERT NER model on colab. But following error occurs
Code:
tr_logits = tr_logits.detach().cpu().numpy()
tr_label_ids = torch.masked_select(b_labels, (preds_mask == 1))
tr_batch_preds ...
- 11
1
vote
0
answers
134
views
Spacy - What does blank models contain?
Hy everyone,
I am trying to create a new NER model which labels custom entities.
As part of that I am using a new blank model for Italian with spacy.blank('it')
I'm creating a new NER pipeline with ...
- 187
1
vote
1
answer
397
views
How to feed my own data to BERT by getting the right placeholder from the tensorflow graph
I am trying to fine tune BERT for NER. I have downloaded a checkpoint from here (https://storage.googleapis.com/bert_models/2018_10_18/uncased_L-12_H-768_A-12.zip)
I have loaded the session and graph ...
- 11
0
votes
3
answers
152
views
How to Handle Imbalance Dataset in NER?
I'm now doing information extraction using NER. My dataset domain (mostly) in computer science. It contains label/tag: "TUJUAN", "METODE", and "TEMUAN". The problem is ...
0
votes
1
answer
356
views
How to visualize entities predicted by NER model?
How do I visualize entities predicted by a Bert-like model that's built using Pytorch?
I built a NER model using Bert. My model works fine. It returns a list of predicted entities:
example :
...
- 53
0
votes
1
answer
257
views
AttributeError: 'list' object has no attribute 'ents' in building NER using BERT
I'm trying to build a NER model using Bert-base-NER for a tweets dataset and ending up getting this error . Please help
This is what I have done
from transformers import AutoTokenizer, ...
0
votes
1
answer
176
views
BertForTokenClassification Has Extra Output
I am using PyTorch's BertForTokenClassification pretrained model to do custom word tagging (not NER or POS, but essentially the same). There are 20 different possible tags (using BIO scheme): 9 B's, 9 ...
- 873
0
votes
1
answer
341
views
BERT NER Python
I am using BERT model for Named Entity Recognition task.
I have torch version - 1.2.0+cu9.2
torch vision version - 0.4.0+cu9.2
Nvidia drivers compatible with cuda 9.2
when i am trying to train my ...
- 24
0
votes
2
answers
524
views
how to use ktrain for NER Offline?
I have trained my English model following this notebook (https://nbviewer.jupyter.org/github/amaiya/ktrain/blob/master/tutorials/tutorial-06-sequence-tagging.ipynb). I am able to save my pretrained ...
0
votes
0
answers
12
views
Mismatched batch size error when calculating cross-entropy loss in PyTorch using BERT Token Classification
I'm currently working on a project where I'm training a neural network model for word classification using PyTorch. However, I'm encountering an error related to mismatched batch sizes when ...
0
votes
0
answers
13
views
Problem with running trainer.train() function while fine tuning BERT
When i run trainer.train() it says the following
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
...
- 41
0
votes
0
answers
20
views
How to get ClassLabel for the ai4privacy/pii-masking-200k dataset?
I am working on fine tuning of the NER Model. For this, I have downloaded the dataset as shown in the below image:
If you take a look at features of this dataset, there isn't "ner_tags" ...
- 111
0
votes
0
answers
28
views
How to chunk large documents and realign the labels for entity extraction task using BERT models using python
I have a need to extract entities from pdf documents. Documents can be in the range of 1 to 5 pages. After doing OCR on these documents we pass it through
When doing tokenization using Deep learning ...
- 1,455
0
votes
0
answers
27
views
Fine tuning BERT(for phone and card) not accurate
This is my code for FT BERT for credit card and Phone number identification. I have a dataset that has sentences and each word has its tag(o, PHN, CRD). I am not able to get the required results. The ...
- 65
0
votes
0
answers
34
views
BERT fine-tuning for NER(specifically for Phone number and credit card)
!pip install simpletransformers
import pandas as pd
from sklearn.preprocessing import LabelEncoder
from sklearn.model_selection import train_test_split
from sklearn.metrics import accuracy_score
from ...
- 65